The table below contain information and download links for all processed ChIP-Seq or ChIP-on-Chip data. Search for the relevant data in the search box below.
The table below contain information and download links for all processed Hi-C data. The Hi-C matrices are available in HiCexplorer format (processed using HiCExplorer), at a given resolution. Matrices of lower resolution can be created by merging bins from the matrices of higher resolution (see documentation for hicMergeMatrixBins ). TAD annotations are provided as processed by HiCExplorer. Loop annotations are provided in GInteraction format, which makes it easy to visualize them using HiCPlotTADs
Search for the relevant data in the search box below.
All Hi-C datasets for Drosophila was processed as described in Ramirez et al. 2016.
Histone marks available for Drosophila was downloaded from modENCODE project. These are ChIP-on-Chip datasets normalized by their respective controls.
These files have been obtained from the ENCODE project website, and normalized with their respective controls log2(ChIP/Input) using deepTools (bin size = 10bp). See here for links to all files from ENCODE.
These files are log2 normalized log2(ChIP/Input), and have been obtained from Roadmap project website. See here for links to all files from ROADMAP.
Drosophila : Kc167 Chromatin states
Chromatin states from (Filion et al. 2010) BED format
Drosophila : Kc167 TAD state
TADs classified as ‘active’, ‘inactive’, ‘repressed/PcG’ and ‘HP1’ based on Epigenetic marks by us BED format
TAD-separation score
TAD-separation score measures, for any position in the genome, the contacts between a left and a right region normalized on the total contacts within the left and within the right regions. bigwig
The motifs found and used in https://www.nature.com/articles/s41467-017-02525-w
We are processing more high-resolution Hi-C datasets as they become available. You can request/suggest us to add any Hi-C data that’s not available on our website at this moment. Just drop us an email at : hicexplorer@googlegroups.com. Any other feedback/suggestions to improve the website are also welcome.